Slide sets
=================================

Background knowledge of HTS2019
---------------------------------

- :download:`HTS background <slides/lecture_slides/0521_hts_background.pdf>`
- :download:`Library preparation <slides/lecture_slides/0522_2_library_preparation.pdf>`
- :download:`Welcome slides <slides/lecture_slides/0528_3_CLT_sre1_presentation.pdf>`

Wet Lab
---------

- :download:`Introduction to Molecular Biology <slides/wetlab/01_Molecular_Biology_Lab_Intro.pdf>`
- :download:`RNaseH Depletion of rRNA <slides/wetlab/02_rnaseh_rrna_depletion.pdf>`
- :download:`NEBNext® Ultra II Directional RNA Library Prep Kit for Illumina® <slides/wetlab/03_manualE7765_trimmed_v2_1__0119.pdf>`
- :download:`Working with RNA: the basics <slides/wetlab/working_with_rna.pdf>`
- :download:`Post lab review <slides/lecture_slides/0603_1_post_lab_review.pdf>`

Bioinformatics
---------------

- :download:`Bioinformatics overview <slides/lecture_slides/0522_3_bioinformatics_overview.pdf>`
- :download:`Welcome slides <slides/lecture_slides/0523_reproducible_research.html>`
- :download:`Short Read Alignment <slides/lecture_slides/0603_2_short_read_alignment.pdf>`
- :download:`Microbiome Analysis <slides/lecture_slides/0619_1_microbiome_analysis_overview.pdf>`

Biostatistics
---------------

- :download:`Introduction handout <slides/Statistics/stat-introduction.pdf>`
- :download:`Introduction <slides/Statistics/stat-introduction-handout.pdf>`
- :download:`Statistical Inference I handout <slides/Statistics/stat-inference-handout.pdf>`
- :download:`Statistical Inference I <slides/Statistics/stat-inference.pdf>`
- :download:`Statistical Inference II handout <slides/Statistics/stat-estimation-handout.pdf>`
- :download:`Statistical Inference II <slides/Statistics/stat-estimation.pdf>`
- :download:`Unsupervised Learning handout <slides/Statistics/stat-unsupervised-handout.pdf>`
- :download:`Unsupervised Learning <slides/Statistics/stat-unsupervised.pdf>`
- :download:`GLM models handout <slides/Statistics/stat-GLM-model-RNA-Seq-handout.pdf>`
- :download:`GLM models <slides/Statistics/stat-GLM-model-RNA-Seq.pdf>`
- :download:`Count Models handout <slides/Statistics/stat-count-model-handout.pdf>`
- :download:`Count Models <slides/Statistics/stat-count-model.pdf>`
- :download:`Source of variability handout <slides/Statistics/stat-source-of-variability-handout.pdf>`
- :download:`Source of variability <slides/Statistics/stat-source-of-variability.pdf>`
- :download:`Gene set analysis <slides/jichun/geneset.pdf>`
- :download:`Multiple Testing <slides/jichun/multipletesting.pdf>`
- :download:`Networks <slides/jichun/network.pdf>`
- :download:`Composition <slides/jichun/composition.pdf>`
- :download:`Time Course handout <slides/Statistics/stat-TC-handout.pdf>`
- :download:`Time Course <slides/Statistics/stat-TC.pdf>`
- :download:`Interactions handout <slides/Statistics/stat-interaction-handout.pdf>`
- :download:`Interactions <slides/Statistics/stat-interaction.pdf>`
- :download:`Ontology <slides/lecture_slides/Masci AM Ontology Lecture 2019.pdf>`